| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.6.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.6.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.5.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/prestor_abseq3/prestor_abseq3/0.5.4 |
| prestor_abseq3 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-prestor | 0.0.5 | package |
| Additional information about this tool |
ln -s '$qual1' ./quality-1_table.tab &&
ln -s '$qual2' ./quality-2_table.tab &&
ln -s '$primer1' ./primers-1_table.tab &&
ln -s '$primer2' ./primers-2_table.tab &&
ln -s '$cons1' ./consensus-1_table.tab &&
ln -s '$cons2' ./consensus-2_table.tab &&
ln -s '$assemble' ./assemble_table.tab &&
ln -s '$maskqual' ./maskqual_table.tab &&
ln -s '$cregion' ./cregion_table.tab &&
Rscript '${prestor_script}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sample: TestSample qual1: prestor_logs/quality-1_table.tab qual2: prestor_logs/quality-2_table.tab primer1: prestor_logs/primers-1_table.tab primer2: prestor_logs/primers-2_table.tab cons1: prestor_logs/consensus-1_table.tab cons2: prestor_logs/consensus-2_table.tab assemble: prestor_logs/assemble_table.tab maskqual: prestor_logs/maskqual_table.tab cregion: prestor_logs/cregion_table.tab |
name: value |
prestor_logs/quality-1_table.tab prestor_logs/quality-2_table.tab prestor_logs/primers-1_table.tab prestor_logs/primers-2_table.tab prestor_logs/consensus-1_table.tab prestor_logs/consensus-2_table.tab prestor_logs/assemble_table.tab prestor_logs/maskqual_table.tab prestor_logs/cregion_table.tab value |