| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval/pileup_interval/1.0.0 |
| pileup_interval |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bx-python | 0.7.1 | package |
| Additional information about this tool |
python '$__tool_directory__/pileup_interval.py'
--input=$input
--output=$output
--coverage=$coverage
--format=$format_type.format
#if $format_type.format == "ten":
--base=$format_type.which_base
--seq_column="None"
--loc_column="None"
--base_column="None"
--cvrg_column="None"
#elif $format_type.format == "manual":
--base="None"
--seq_column=$format_type.seq_column
--loc_column=$format_type.loc_column
--base_column=$format_type.base_column
--cvrg_column=$format_type.cvrg_column
#else:
--base="None"
--seq_column="None"
--loc_column="None"
--base_column="None"
--cvrg_column="None"
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: pileup_interval_in1.tabular format_type|format: six coverage: 3 |
name: value |
pileup_interval_in1.tabular value |
| Test-2 |
input: pileup_interval_in2.tabular format_type|which_base: first format_type|format: ten coverage: 3 |
name: value |
pileup_interval_in2.tabular value |
| Test-3 |
input: pileup_interval_in2.tabular format_type|seq_column: 1 format_type|loc_column: 2 format_type|base_column: 3 format_type|cvrg_column: 8 format_type|format: manual coverage: 3 |
name: value |
pileup_interval_in2.tabular value |