| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_signature/signature/2.1.2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_signature/signature/2.1.2 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_signature/signature/2.1.1 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_signature/signature/2.1.0 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_signature/signature/2.0.5 |
| signature |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bowtie | 1.1.2 | package |
| numpy | 1.11.2=py27_0 | package |
| pysam | 0.11.2.1=py27_0 | package |
| r-latticeextra | 0.6_28=r3.3.2_0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
minquery: 23 minscope: 5 maxscope: 15 refGenomeSource|input: sr_bowtie.bam maxtarget: 29 mintarget: 23 maxquery: 29 graph_type: global refGenomeSource|genomeSource: history refGenomeSource|ownFile: ensembl.fa |
output: signature.tab output2: signature.pdf |
ensembl.fa sr_bowtie.bam signature.tab signature.pdf |