Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.3 |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.2 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.1 |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0 |
samtools_calmd |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
samtools | 1.9 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
reference_source|reference_source_selector: history input_bam: phiX.bam reference_source|ref_fasta: phiX.fasta baq_settings|use_baq: option_set|option_sets: default |
attributes: name |
phiX.bam phiX.fasta name |
Test-2 |
baq_settings|use_baq: -r option_set|option_sets: advanced reference_source|reference_source_selector: history reference_source|ref_fasta: phiX.fasta baq_settings|extended_baq: True option_set|adjust_mq: 50 input_bam: phiX.bam option_set|change_identical: True |
attributes: name |
phiX.bam phiX.fasta name |