| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.4 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0 |
| samtools_calmd |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.13 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: phiX.bam addref_cond|ref: phiX.fasta addref_cond|addref_select: history baq_settings|use_baq: option_set|option_sets: default |
name: value |
phiX.bam phiX.fasta value |
| Test-2 |
input: phiX.bam addref_cond|ref: phiX.fasta addref_cond|addref_select: history baq_settings|extended_baq: True baq_settings|use_baq: -r option_set|change_identical: True option_set|adjust_mq: 50 option_set|option_sets: advanced |
name: value |
phiX.bam phiX.fasta value |