Repository revision
1:f880686a9194

Repository 'paralyzer'
hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer

PARalyzer tool metadata
Miscellaneous
PARalyzer
A method to map interaction sites between RNA-binding proteins and their targets
paralyzer
toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/1.5
1.5
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/1.5 (this tool)
paralyzer
Requirements (dependencies defined in the <requirements> tag set)
name version type
paralyzer 1.5 package
ucsc-fatotwobit 324 package
Functional tests
name inputs outputs required files
Test-1 input_sam: input.sam
params|settingsType: custom
methods|choice: EXTEND_BY_READ
params|min_conv_loc_cluster: 2
params|max_num_conv_mis: 1
params|min_read_cluster: 2
params|min_read_kde: 3
conversion|character_to: C
conversion|selection: custom
params|min_conv_cluster: 2
params|min_read_group: 5
refGenomeSource|ownFile: input.fa
params|min_read_cluster_inc: 1
refGenomeSource|genomeSource: history
params|min_read_len: 20
params|min_cluster_size: 11
conversion|character_from: T
attributes: name
attributes: name
attributes: name
input.sam
input.fa
name