Repository revision
5:426d707dfc47

Repository 'lofreq_indelqual'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual

Insert indel qualities tool metadata
Miscellaneous
into a BAM file
lofreq_indelqual
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0
2.1.5+galaxy0
lofreq version | grep version | cut -d ' ' -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.3.1+galaxy0
lofreq_indelqual
Requirements (dependencies defined in the <requirements> tag set)
name version type
lofreq 2.1.5 package
Functional tests
name inputs outputs required files
Test-1 reads: lofreq-in1.bam
strategy|insertions: 20
strategy|deletions: 30
strategy|selector: uniform
name: value
lofreq-in1.bam
value
Test-2 reads: lofreq-in1.bam
strategy|reference_source|ref: pBR322.fa
strategy|reference_source|ref_selector: history
strategy|selector: dindel
name: value
lofreq-in1.bam
pBR322.fa
value
Test-3 reads: lofreq-in1.bam
strategy|insertions: 20
strategy|selector: uniform
name: value
lofreq-in1.bam
value