| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.1.0 |
| IDFilter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: IDFilter_1_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|proteins: IDFilter_1_input.fas whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_1_input.idXML IDFilter_1_input.fas value |
| Test-2 |
in: IDFilter_3_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|peptides: IDFilter_3_2_input.idXML blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_3_input.idXML IDFilter_3_2_input.idXML value |
| Test-3 |
in: IDFilter_4_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.08 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_4_input.idXML value |
| Test-4 |
in: IDFilter_5_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 32.0 score|prot: 25.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_5_input.idXML value |
| Test-5 |
in: IDFilter_5_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 32.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_5_input.idXML value |
| Test-6 |
in: IDFilter_5_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 25.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_5_input.idXML value |
| Test-7 |
in: IDFilter_5_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: True precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 25.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_5_input.idXML value |
| Test-8 |
in: IDFilter_6_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 2 best|n_protein_hits: 10 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_6_input.idXML value |
| Test-9 |
in: IDFilter_7_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: True adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_7_input.idXML value |
| Test-10 |
in: IDFilter_8_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: 200:350 precursor|mz: 999:1000 precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_8_input.idXML value |
| Test-11 |
in: IDFilter_9_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.05 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_9_input.idXML value |
| Test-12 |
in: IDFilter_10_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: True precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.3 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_10_input.idXML value |
| Test-13 |
in: IDFilter_11_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: True delete_unreferenced_peptide_hits: True precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_11_input.idXML value |
| Test-14 |
in: IDFilter_12_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|fasta: IDFilter_12_input.fasta in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_12_input.idXML IDFilter_12_input.fasta value |
| Test-15 |
in: IDFilter_13_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|fasta: IDFilter_13_input.fasta in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: 1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_13_input.idXML IDFilter_13_input.fasta value |
| Test-16 |
in: IDFilter_14_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|fasta: IDFilter_14_input.fasta in_silico_digestion|enzyme: Trypsin/P in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: 1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_14_input.idXML IDFilter_14_input.fasta value |
| Test-17 |
in: IDFilter_15_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|fasta: IDFilter_15_input.fasta in_silico_digestion|enzyme: Trypsin/P in_silico_digestion|specificity: semi in_silico_digestion|missed_cleavages: 1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_15_input.idXML IDFilter_15_input.fasta value |
| Test-18 |
in: IDFilter_16_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|fasta: IDFilter_16_input.fasta in_silico_digestion|enzyme: Trypsin/P in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: 1 in_silico_digestion|methionine_cleavage: True missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_16_input.idXML IDFilter_16_input.fasta value |
| Test-19 |
in: IDFilter_missed_cleavages_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: :2 missed_cleavages|enzyme: Lys-N rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_missed_cleavages_input.idXML value |
| Test-20 |
in: IDFilter_missed_cleavages_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: 2: missed_cleavages|enzyme: Lys-N rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_missed_cleavages_input.idXML value |
| Test-21 |
in: IDFilter_missed_cleavages_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: 1:3 missed_cleavages|enzyme: Lys-N rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_missed_cleavages_input.idXML value |
| Test-22 |
in: IDFilter_missed_cleavages_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: 1:0 missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_missed_cleavages_input.idXML value |
| Test-23 |
in: IDFilter_16_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: "calcMZ" "gt" "750.0" adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_16_input.idXML value |
| Test-24 |
in: IDFilter_16_input.idXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: "end" "ne" "23" adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDFilter_16_input.idXML value |
| Test-25 |
in: IDMapper_2_output.consensusXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.0 whitelist|protein_accessions: "Q9HP81" whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_2_output.consensusXML value |
| Test-26 |
in: Epifany_3_out.consensusXML var_mods: False remove_shared_peptides: False keep_unreferenced_protein_hits: False remove_decoys: False delete_unreferenced_peptide_hits: False precursor|rt: : precursor|mz: : precursor|length: : precursor|charge: : score|pep: 0.0 score|prot: 0.0 score|protgroup: 0.99 whitelist|protein_accessions: whitelist|ignore_modifications: False whitelist|modifications: blacklist|protein_accessions: blacklist|ignore_modifications: False blacklist|modifications: in_silico_digestion|enzyme: Trypsin in_silico_digestion|specificity: full in_silico_digestion|missed_cleavages: -1 in_silico_digestion|methionine_cleavage: False missed_cleavages|number_of_missed_cleavages: : missed_cleavages|enzyme: Trypsin rt|p_value: 0.0 rt|p_value_1st_dim: 0.0 mz|error: -1.0 mz|unit: ppm best|n_peptide_hits: 0 best|n_protein_hits: 0 best|strict: False best|n_to_m_peptide_hits: : adv_opts_cond|remove_duplicate_psm: False adv_opts_cond|remove_peptide_hits_by_metavalue: adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
Epifany_3_out.consensusXML value |