| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.11.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.11.1 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.9.0 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.4 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.3.2 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2 |
| spades |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| spades | 3.12.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sc: False careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq |
name: value name: value |
ecoli_1K_1.fq ecoli_1K_2.fq value |
| Test-2 |
sc: False onlyassembler: True careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fasta libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fasta |
name: value name: value |
ecoli_1K_1.fasta ecoli_1K_2.fasta value |
| Test-3 |
sc: False careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq.gz libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq.gz |
name: value name: value |
ecoli_1K_1.fq.gz ecoli_1K_2.fq.gz value |
| Test-4 |
sc: False careful: False kmer_choice|auto_kmer_choice: True libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq |
name: value |
ecoli_1K_1.fq ecoli_1K_2.fq value |
| Test-5 |
sc: False careful: False kmer_choice|kmers: 77 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq |
name: value |
ecoli_1K_1.fq ecoli_1K_2.fq value |
| Test-6 |
sc: False careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq contig_graph_out: True scaffold_graph_out: True |
name: value name: value name: value name: value |
ecoli_1K_1.fq ecoli_1K_2.fq value |
| Test-7 |
sc: False careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq |
name: value name: value |
ecoli_1K_1.fq ecoli_1K_2.fq value |
| Test-8 |
sc: False careful: False kmer_choice|kmers: 33 libraries_0|lib_type: paired_end libraries_0|files_0|file_type|fwd_reads: ecoli_1K_1.fq.gz libraries_0|files_0|file_type|rev_reads: ecoli_1K_2.fq.gz |
name: value name: value |
ecoli_1K_1.fq.gz ecoli_1K_2.fq.gz value |