| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/abims-sbr/mutcount/mutcount/2.2.0 (this tool) |
| mutcount |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 2.7 | package |
| pandas | 0.20.0 | package |
| numpy | 1.12.0 | package |
| r-optparse | 1.4.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
method|list_species: Ps,Pp,Pu,Ac,Ap,Pf,Pg,Ph,Pi method|method_run: concat method|concat_nuc: concatenation.fasta method|num_sampled: 200 method|list_species_boot: Ps,Pp,Pu,Pf method|num_iter: 200 |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
concatenation.fasta name |
| Test-2 |
method|sps_list: Ha,Lf,Bs,Bj method|format_run: nucleic method|sep_file: ['sep_nuc/orthogroup_109_with_3_species.fasta', 'sep_nuc/orthogroup_113_with_4_species.fasta', 'sep_nuc/orthogroup_253_with_2_species.fasta', 'sep_nuc/orthogroup_283_with_2_species.fasta', 'sep_nuc/orthogroup_299_with_2_species.fasta', 'sep_nuc/orthogroup_301_with_4_species.fasta', 'sep_nuc/orthogroup_316_with_4_species.fasta', 'sep_nuc/orthogroup_335_with_4_species.fasta', 'sep_nuc/orthogroup_343_with_4_species.fasta', 'sep_nuc/orthogroup_368_with_4_species.fasta', 'sep_nuc/orthogroup_404_with_4_species.fasta', 'sep_nuc/orthogroup_442_with_4_species.fasta', 'sep_nuc/orthogroup_487_with_4_species.fasta', 'sep_nuc/orthogroup_508_with_4_species.fasta', 'sep_nuc/orthogroup_544_with_4_species.fasta', 'sep_nuc/orthogroup_546_with_4_species.fasta', 'sep_nuc/orthogroup_588_with_4_species.fasta', 'sep_nuc/orthogroup_623_with_4_species.fasta', 'sep_nuc/orthogroup_651_with_4_species.fasta', 'sep_nuc/orthogroup_660_with_4_species.fasta', 'sep_nuc/orthogroup_696_with_4_species.fasta', 'sep_nuc/orthogroup_707_with_4_species.fasta', 'sep_nuc/orthogroup_727_with_4_species.fasta', 'sep_nuc/orthogroup_761_with_4_species.fasta'] method|method_run: separated method|sps_gp2: Bs,Bj method|sps_gp1: Ha,Lf |
sep_nuc/orthogroup_109_with_3_species.fasta sep_nuc/orthogroup_113_with_4_species.fasta sep_nuc/orthogroup_253_with_2_species.fasta sep_nuc/orthogroup_283_with_2_species.fasta sep_nuc/orthogroup_299_with_2_species.fasta sep_nuc/orthogroup_301_with_4_species.fasta sep_nuc/orthogroup_316_with_4_species.fasta sep_nuc/orthogroup_335_with_4_species.fasta sep_nuc/orthogroup_343_with_4_species.fasta sep_nuc/orthogroup_368_with_4_species.fasta sep_nuc/orthogroup_404_with_4_species.fasta sep_nuc/orthogroup_442_with_4_species.fasta sep_nuc/orthogroup_487_with_4_species.fasta sep_nuc/orthogroup_508_with_4_species.fasta sep_nuc/orthogroup_544_with_4_species.fasta sep_nuc/orthogroup_546_with_4_species.fasta sep_nuc/orthogroup_588_with_4_species.fasta sep_nuc/orthogroup_623_with_4_species.fasta sep_nuc/orthogroup_651_with_4_species.fasta sep_nuc/orthogroup_660_with_4_species.fasta sep_nuc/orthogroup_696_with_4_species.fasta sep_nuc/orthogroup_707_with_4_species.fasta sep_nuc/orthogroup_727_with_4_species.fasta sep_nuc/orthogroup_761_with_4_species.fasta |
|
| Test-3 |
method|sps_list: Ps,Pp,Pf,Ac,Pg,Ap method|format_run: proteic method|sep_file: ['sep_aa/locus_3sp_2.fasta', 'sep_aa/locus_3sp_7.fasta', 'sep_aa/locus_4sp_4.fasta', 'sep_aa/locus_4sp_6.fasta', 'sep_aa/locus_6sp_10.fasta', 'sep_aa/locus_6sp_11.fasta', 'sep_aa/locus_6sp_16.fasta', 'sep_aa/locus_6sp_18.fasta', 'sep_aa/locus_6sp_25.fasta', 'sep_aa/locus_6sp_27.fasta', 'sep_aa/locus_6sp_30.fasta', 'sep_aa/locus_6sp_32.fasta', 'sep_aa/locus_6sp_35.fasta', 'sep_aa/locus_6sp_38.fasta', 'sep_aa/locus_6sp_39.fasta', 'sep_aa/locus_6sp_40.fasta', 'sep_aa/locus_6sp_41.fasta', 'sep_aa/locus_6sp_46.fasta', 'sep_aa/locus_6sp_47.fasta', 'sep_aa/locus_6sp_50.fasta', 'sep_aa/locus_6sp_53.fasta', 'sep_aa/locus_6sp_57.fasta', 'sep_aa/locus_6sp_58.fasta', 'sep_aa/locus_6sp_60.fasta'] method|method_run: separated method|sps_gp2: Ap,Ps method|sps_gp1: Pp,Pg |
sep_aa/locus_3sp_2.fasta sep_aa/locus_3sp_7.fasta sep_aa/locus_4sp_4.fasta sep_aa/locus_4sp_6.fasta sep_aa/locus_6sp_10.fasta sep_aa/locus_6sp_11.fasta sep_aa/locus_6sp_16.fasta sep_aa/locus_6sp_18.fasta sep_aa/locus_6sp_25.fasta sep_aa/locus_6sp_27.fasta sep_aa/locus_6sp_30.fasta sep_aa/locus_6sp_32.fasta sep_aa/locus_6sp_35.fasta sep_aa/locus_6sp_38.fasta sep_aa/locus_6sp_39.fasta sep_aa/locus_6sp_40.fasta sep_aa/locus_6sp_41.fasta sep_aa/locus_6sp_46.fasta sep_aa/locus_6sp_47.fasta sep_aa/locus_6sp_50.fasta sep_aa/locus_6sp_53.fasta sep_aa/locus_6sp_57.fasta sep_aa/locus_6sp_58.fasta sep_aa/locus_6sp_60.fasta |