| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.15.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.15.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.14+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.14 |
| hifiasm |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hifiasm | 0.16.1 | package |
| yak | 0.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-2 |
mode|reads: ['hifiasm-in2-0.fa.gz', 'hifiasm-in2-1.fa.gz', 'hifiasm-in2-2.fa.gz', 'hifiasm-in2-3.fa.gz', 'hifiasm-in2-4.fa.gz'] mode|mode_selector: standard filter_bits: 0 |
name: value name: value name: value name: value |
hifiasm-in2-0.fa.gz hifiasm-in2-1.fa.gz hifiasm-in2-2.fa.gz hifiasm-in2-3.fa.gz hifiasm-in2-4.fa.gz value |
| Test-3 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 log_out: True |
name: value name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-4 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 hic_partition|h1: hic_1.fastq.gz hic_partition|h2: hic_2.fastq.gz hic_partition|n_weight: 1 hic_partition|n_perturb: 1 hic_partition|l_msjoin: 0 hic_partition|hic_partition_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz hic_1.fastq.gz hic_2.fastq.gz value |
| Test-5 |
mode|reads: child.fasta.gz mode|hap1_reads: paternal.fasta.gz mode|hap2_reads: maternal.fasta.gz mode|max_kmers: 2 mode|min_kmers: 5 mode|mode_selector: trio filter_bits: 0 |
name: value name: value name: value name: value |
child.fasta.gz paternal.fasta.gz maternal.fasta.gz value |
| Test-6 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 assembly_options|ignore_error_corrected: True assembly_options|assembly_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-7 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 purge_options|n_hap: 1 purge_options|purge_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-8 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 advanced_options|min_hist_cnt: 1 advanced_options|advanced_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-9 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 advanced_options|advanced_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-10 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 advanced_options|hg_size: 1k advanced_options|advanced_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |
| Test-11 |
mode|reads: hifiasm-in1.fa.gz mode|mode_selector: standard filter_bits: 0 assembly_options|assembly_selector: set |
name: value name: value name: value name: value |
hifiasm-in1.fa.gz value |