Repository revision
6:e951f9d38339

Repository 'metaphlan'
hg clone https://toolshed.g2.bx.psu.edu/repos/dannon/metaphlan

MetaPhlAn tool metadata
Miscellaneous
MetaPhlAn
Metagenomic Phylogenetic Analysis
metaphlan
toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/metaphlan/1.7.0
1.7.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/metaphlan/1.7.0 (this tool)
toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/metaphlan/1.6.0
toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/metaphlan/1.0
metaphlan
Requirements (dependencies defined in the <requirements> tag set)
name version type
metaphlan 1.7.0 package
bowtie2 not provided package
Additional information about this tool
python \${METAPHLAN_PATH}/metaphlan.py 
    $input 
    -t $analysis_type.analysis_type_select 
    #if $analysis_type.analysis_type_select == "rel_ab"
    --tax_lev $analysis_type.taxonomic_level 
    #end if
    --bowtie2db \${METAPHLAN_PATH}/bowtie2db/mpa 
    --no_map 
    --bt2_ps $PresetsForBowtie2 
    -o $output 
  
None
False
False
Functional tests
No functional tests defined