Repository revision
10:6b555020d5f3

Repository 'openms_noisefiltersgolay'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay

NoiseFilterSGolay tool metadata
Miscellaneous
Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.
NoiseFilterSGolay
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.5+galaxy0
2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_noisefiltersgolay/NoiseFilterSGolay/2.1.0
NoiseFilterSGolay
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.5 package
openms-thirdparty 2.5 package
blast 2.9.0 package
openjdk 8.0.192 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: NoiseFilterSGolay_1_input.mzML
algorithm|frame_length: 9
algorithm|polynomial_order: 4
adv_opts_cond|processOption: inmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
NoiseFilterSGolay_1_input.mzML
value
Test-2 in: NoiseFilterSGolay_2_input.chrom.mzML
algorithm|frame_length: 11
algorithm|polynomial_order: 4
adv_opts_cond|processOption: inmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
NoiseFilterSGolay_2_input.chrom.mzML
value
Test-3 in: NoiseFilterSGolay_1_input.mzML
algorithm|frame_length: 9
algorithm|polynomial_order: 4
adv_opts_cond|processOption: lowmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
NoiseFilterSGolay_1_input.mzML
value
Test-4 in: NoiseFilterSGolay_2_input.chrom.mzML
algorithm|frame_length: 11
algorithm|polynomial_order: 4
adv_opts_cond|processOption: lowmemory
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
NoiseFilterSGolay_2_input.chrom.mzML
value