| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.40.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.40.0 (this tool) |
| stacks_cstacks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 1.40 | package |
| velvet | 1.2.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_col: list collection |
catalogtags: None catalogsnps: None catalogalleles: None |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv |
| Test-2 |
input_col: list collection gapped|use_gapped: True |
catalogtags: None catalogsnps: None catalogalleles: None |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv |