| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.22.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.20.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.10.1 |
| scater_plot_pca |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-scater | 1.22.0 | package |
| r-optparse | 1.7.1 | package |
| r-workflowscriptscommon | 0.0.7 | package |
| bioconductor-loomexperiment | 1.12.0 | package |
| Additional information about this tool |
Rscript '$__tool_directory__/scater-plot-pca.R'
-i '$input_loom'
#if str($colour_by).strip():
--colour-by '$colour_by'
#end if
#if str($size_by).strip():
--size-by '$size_by'
#end if
#if str($shape_by).strip():
--shape-by '$shape_by'
#end if
-o '$output_plot'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_loom: scater_qcready.loom colour_by: Treatment shape_by: Mutation_Status |
name: value |
scater_qcready.loom value |