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Repository revision

Revision: 0:f079716f598c

Repository 'smgu_frameshift_deletions_checks'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks

Frameshift Deletions Checks tool metadata

Miscellaneous

Name: Frameshift Deletions Checks

Description: reports on frameshifting indels in consensus sequence

Id: smgu_frameshift_deletions_checks

Guid: toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy0

Version: 0.3.9+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy0 (this tool)

smgu_frameshift_deletions_checks

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

smallgenomeutilities

0.3.9

package

Functional tests

name

inputs

outputs

required files

Test-1

consensus: consensus.bcftools.fasta.gz
input: REF_aln_trim.cram
reference: NC_045512.2.fasta.gz
genes: Genes_NC_045512.2.GFF3

name: value

consensus.bcftools.fasta.gz
REF_aln_trim.cram
NC_045512.2.fasta.gz
Genes_NC_045512.2.GFF3
value