| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+galaxy6 |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+4 |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+3 |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+2 |
| toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.2.1+1 |
| dropletutils |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-dropletutils | 1.2.1 | package |
| r-matrix | 1.2_17 | package |
| bioconductor-scater | 1.10.1 | package |
| fonts-conda-ecosystem | 1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tenx_format|input_genes: in_genes.tsv tenx_format|input_barcodes: in_barcodes.tsv tenx_format|use: directory operation|outformat: h5ad tenx_format|input: in_matrix.mtx operation|use: filter |
attributes: name |
in_matrix.mtx in_genes.tsv in_barcodes.tsv name |
| Test-2 |
tenx_format|input_genes: in_genes.tsv tenx_format|input_barcodes: in_barcodes.tsv tenx_format|use: directory operation|outformat: tsv tenx_format|input: in_matrix.mtx operation|use: filter |
attributes: name |
in_matrix.mtx in_genes.tsv in_barcodes.tsv name |
| Test-3 |
tenx_format|input_genes: in_genes.tsv tenx_format|input_barcodes: in_barcodes.tsv operation|lower: 120 tenx_format|use: directory tenx_format|input: in_matrix.mtx operation|use: barcode_rank |
attributes: name |
in_matrix.mtx in_genes.tsv in_barcodes.tsv name |
| Test-4 |
operation|method|fdr_thresh: 0.02 tenx_format|input_genes: in_genes.tsv operation|method|use: emptydrops tenx_format|input_barcodes: in_barcodes.tsv tenx_format|use: directory operation|method|lower: 150 operation|outformat: h5ad tenx_format|input: in_matrix.mtx operation|use: filter |
attributes: name attributes: name attributes: name |
in_matrix.mtx in_genes.tsv in_barcodes.tsv name |
| Test-5 |
operation|method|fdr_thresh: 0.02 operation|method|use: emptydrops operation|method|lower: 150 tenx_format|use: h5ad operation|outformat: h5ad tenx_format|input: in_matrix.h5ad operation|use: filter |
attributes: name attributes: name attributes: name |
in_matrix.h5ad name |
| Test-6 |
operation|method|use: defaultdrops operation|method|expected: 2000 operation|method|upperquant: 0.85 tenx_format|use: tsv operation|outformat: directory tenx_format|input: in_matrix.tsv operation|use: filter |
attributes: name attributes: name attributes: name |
in_matrix.tsv name |