| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/maf_stats/maf_stats1/1.0.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/maf_stats/maf_stats1/1.0.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/maf_stats/maf_stats1/1.0.1 |
| maf_stats1 |
| Requirements (dependencies defined in the <requirements> tag set) |
| Additional information about this tool |
#if $maf_source_type.maf_source == 'cached'
#set $tab = '\t'
echo '$maf_source_type.mafType.fields.name${tab}$maf_source_type.mafType.fields.value${tab}$maf_source_type.mafType.fields.indexed_for${tab}$maf_source_type.mafType.fields.exists_in_maf${tab}$maf_source_type.mafType.fields.path' >> ./maf_index.loc &&
#end if
python '$__tool_directory__/maf_stats.py' $maf_source_type.maf_source
#if $maf_source_type.maf_source == 'user':
'$input2'
#else:
$maf_source_type.mafType.fields.value
#end if
'$input1' '$out_file1' $dbkey ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} $summary '.'
#if $maf_source_type.maf_source == 'user':
'$input2.metadata.maf_index'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: maf_stats-in1.bed maf_source_type|mafType: TEST maf_source_type|maf_source: cached summary: false |
name: value |
maf_stats-in1.bed value |
| Test-2 |
input1: maf_stats-in2.bed maf_source_type|mafType: TEST maf_source_type|maf_source: cached summary: true |
name: value |
maf_stats-in2.bed value |