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Repository revision

Revision: 9:74dfe7be1563

Repository 'mothur_chimera_check'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_check

Chimera.check tool metadata

Miscellaneous

Name: Chimera.check

Description: Find putative chimeras using chimeraCheck

Id: mothur_chimera_check

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_check/mothur_chimera_check/1.39.5.0

Version: 1.39.5.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_check/mothur_chimera_check/1.39.5.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_check/mothur_chimera_check/1.36.1.0

mothur_chimera_check

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.39.5

package

Functional tests

name

inputs

outputs

required files

Test-1

fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
alignment|reference: HMP_MOCK.v35.align
alignment|source: hist
savelog: True

name: value
name: value

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
HMP_MOCK.v35.align
value

Test-2

fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
alignment|reference: HMP_MOCK.v35.align
alignment|source: hist
svg_cond|name: Mock_S280_L001_R1_001_small.trim.contigs.good.names_tiny
svg_cond|svg: yes
savelog: True

name: value
name: value

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
HMP_MOCK.v35.align
Mock_S280_L001_R1_001_small.trim.contigs.good.names_tiny
value