Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/checkm_lineage_wf/checkm_lineage_wf/1.2.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/checkm_lineage_wf/checkm_lineage_wf/1.2.0+galaxy0 (this tool) |
checkm_lineage_wf |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
checkm-genome | 1.2.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
bins|bins_ind: 637000110.fna bins|select: individual tree_analyze|reduced_tree: True tree_analyze|ali: False tree_analyze|nt: False tree_analyze|genes: False lineage_set|unique: 10 lineage_set|multi: 10 lineage_set|force_domain: False lineage_set|no_refinement: False qa|individual_markers: False qa|skip_adj_correction: False qa|skip_pseudogene_correction: False qa|aai_strain: 0.9 qa|ignore_thresholds: False qa|e_value: 1e-10 qa|length: 0.7 extra_outputs: |
name: value |
637000110.fna value |
Test-2 |
bins|bins_coll: list collection bins|select: collection tree_analyze|reduced_tree: True tree_analyze|ali: True tree_analyze|nt: False tree_analyze|genes: False lineage_set|unique: 10 lineage_set|multi: 10 lineage_set|force_domain: False lineage_set|no_refinement: False qa|individual_markers: False qa|skip_adj_correction: False qa|skip_pseudogene_correction: False qa|aai_strain: 0.9 qa|ignore_thresholds: False qa|e_value: 1e-10 qa|length: 0.7 extra_outputs: ['phylo_hmm_info', 'bin_stats_tree', 'hmmer_tree', 'concatenated_tre', 'concatenated_fasta', 'marker_file', 'hmmer_analyze', 'bin_stats_analyze', 'bin_stats_ext', 'checkm_hmm_info', 'marker_gene_stats'] |
name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value |
637000110.fna value |