| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/1.1.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.5.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_count/umi_tools_count/0.5.3.0 |
| umi_tools_count |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 0.5.5 | package |
| sed | 4.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: chr19_gene_tags.bam barcodes|extract_umi_method: umis method: directional wide_format_cell_counts: False advanced|gene_tag: XF advanced|skip_tags_regex: ^[__|Unassigned] advanced|per_cell: False advanced|random_seed: 123456789 |
name: value |
chr19_gene_tags.bam value |
| Test-2 |
input_bam: chr19_gene_tags.bam barcodes|extract_umi_method: umis method: directional wide_format_cell_counts: False advanced|gene_tag: XF advanced|skip_tags_regex: ^[__|Unassigned] advanced|per_cell: True advanced|random_seed: 123456789 |
name: value |
chr19_gene_tags.bam value |
| Test-3 |
input_bam: chr19_gene_tags.bam barcodes|extract_umi_method: umis method: directional wide_format_cell_counts: True advanced|gene_tag: XF advanced|skip_tags_regex: ^[__|Unassigned] advanced|per_cell: True advanced|random_seed: 123456789 |
name: value |
chr19_gene_tags.bam value |
| Test-4 |
input_bam: fc.ENSDARG00000019692.bam method: unique |
name: value |
fc.ENSDARG00000019692.bam value |
| Test-5 |
input_bam: fc.ENSDARG00000019692.bam method: unique cond_extra|custom_label: test cond_extra|prepender: string |
name: value |
fc.ENSDARG00000019692.bam value |
| Test-6 |
input_bam: fc.ENSDARG00000019692.bam method: unique cond_extra|prepender: dataset name |
name: value |
fc.ENSDARG00000019692.bam value |