Revision: 10:4e469b758915

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile

Miscellaneous

Name: dada2: plotQualityProfile

Description: plot a visual summary of the quality scores

Id: dada2_plotQualityProfile

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.34.0+galaxy0

Version: 1.34.0+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.34.0+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.34.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.30.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.28+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.28+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.12+galaxy0

dada2_plotQualityProfile

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.34.0	package

Functional tests

name	inputs	outputs	required files
Test-1	batch_cond|paired_cond|reads: list:paired collection batch_cond|paired_cond|paired_select: paired batch_cond|aggregate: False batch_cond|batch_select: joint	name: value name: value	F3D0_S188_L001_R1_001.fastq.gz F3D0_S188_L001_R2_001.fastq.gz F3D141_S207_L001_R1_001.fastq.gz F3D141_S207_L001_R2_001.fastq.gz value
Test-2	batch_cond|paired_cond|reads: ['F3D0_S188_L001_R1_001.fastq.gz', 'F3D141_S207_L001_R1_001.fastq.gz'] batch_cond|paired_cond|sdaer: ['F3D0_S188_L001_R2_001.fastq.gz', 'F3D141_S207_L001_R2_001.fastq.gz'] batch_cond|paired_cond|paired_select: separate batch_cond|aggregate: False batch_cond|batch_select: joint	name: value name: value	F3D0_S188_L001_R1_001.fastq.gz F3D141_S207_L001_R1_001.fastq.gz F3D0_S188_L001_R2_001.fastq.gz F3D141_S207_L001_R2_001.fastq.gz value
Test-3	batch_cond|paired_cond|reads: ['F3D0_S188_L001_R1_001.fastq.gz', 'F3D0_S188_L001_R2_001.fastq.gz'] batch_cond|paired_cond|paired_select: single batch_cond|aggregate: True batch_cond|batch_select: joint n: 10000	name: value	F3D0_S188_L001_R1_001.fastq.gz F3D0_S188_L001_R2_001.fastq.gz value
Test-4	batch_cond|paired_cond|reads: paired collection batch_cond|paired_cond|paired_select: paired batch_cond|batch_select: batch	name: value name: value	F3D0_S188_L001_R1_001.fastq.gz F3D0_S188_L001_R2_001.fastq.gz value
Test-5	batch_cond|paired_cond|reads: F3D0_S188_L001_R1_001.fastq.gz batch_cond|paired_cond|sdaer: F3D0_S188_L001_R2_001.fastq.gz batch_cond|paired_cond|paired_select: separate batch_cond|batch_select: batch	name: value name: value	F3D0_S188_L001_R1_001.fastq.gz F3D0_S188_L001_R2_001.fastq.gz value
Test-6	batch_cond|paired_cond|reads: F3D0_S188_L001_R1_001.fastq.gz batch_cond|paired_cond|paired_select: single batch_cond|batch_select: batch n: 10000	name: value	F3D0_S188_L001_R1_001.fastq.gz value