Repository revision
1:fa11922f3d91

Repository 'dada2_plotqualityprofile'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile

dada2: plotQualityProfile tool metadata
Miscellaneous
plot a visual summary of the quality scores
dada2_plotQualityProfile
toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.12+galaxy1
1.12+galaxy1
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.12+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.12+galaxy0
dada2_plotQualityProfile
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-dada2 1.12 package
Functional tests
name inputs outputs required files
Test-1 batch_cond|paired_cond|reads: list:paired collection
batch_cond|paired_cond|paired_select: paired
batch_cond|aggregate: False
batch_cond|batch_select: joint
attributes: name
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
F3D0_S188_L001_R2_001.fastq.gz
name
Test-2 batch_cond|aggregate: False
batch_cond|paired_cond|paired_select: separate
batch_cond|paired_cond|reads: F3D0_S188_L001_R1_001.fastq.gz
batch_cond|paired_cond|sdaer: F3D0_S188_L001_R2_001.fastq.gz
batch_cond|batch_select: joint
attributes: name
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
F3D0_S188_L001_R2_001.fastq.gz
name
Test-3 batch_cond|batch_select: joint
batch_cond|paired_cond|reads: ['F3D0_S188_L001_R1_001.fastq.gz', 'F3D0_S188_L001_R2_001.fastq.gz']
batch_cond|paired_cond|paired_select: single
batch_cond|aggregate: True
n: 10000
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
F3D0_S188_L001_R2_001.fastq.gz
name
Test-4 batch_cond|paired_cond|reads: paired collection
batch_cond|paired_cond|paired_select: paired
batch_cond|batch_select: batch
attributes: name
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
F3D0_S188_L001_R2_001.fastq.gz
name
Test-5 batch_cond|paired_cond|reads: F3D0_S188_L001_R1_001.fastq.gz
batch_cond|paired_cond|paired_select: separate
batch_cond|paired_cond|sdaer: F3D0_S188_L001_R2_001.fastq.gz
batch_cond|batch_select: batch
attributes: name
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
F3D0_S188_L001_R2_001.fastq.gz
name
Test-6 batch_cond|paired_cond|reads: F3D0_S188_L001_R1_001.fastq.gz
batch_cond|paired_cond|paired_select: single
batch_cond|batch_select: batch
n: 10000
attributes: name
F3D0_S188_L001_R1_001.fastq.gz
name