| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0 |
| mothur_align_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.fasta alignment|reference: HMP_MOCK.v35.align alignment|source: history savelog: True |
name: value name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.good.fasta HMP_MOCK.v35.align value |
| Test-2 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.fasta alignment|reference: HMP_MOCK.v35.align alignment|source: history search|method: kmer scoring|match: 2 scoring|mismatch: -15 scoring|gapopen: -6 scoring|gapextend: -3 scoring|adjust: yes savelog: True |
name: value name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.good.fasta HMP_MOCK.v35.align value |
| Test-3 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.fasta alignment|reference: HMP_MOCK.v35.align alignment|source: history search|method: suffix align: gotoh scoring|match: 2 scoring|mismatch: -15 scoring|gapopen: -6 scoring|gapextend: -3 scoring|adjust: yes savelog: True |
name: value name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.good.fasta HMP_MOCK.v35.align value |
| Test-4 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.fasta alignment|reference: HMP_MOCK.v35.align alignment|source: history search|method: blast align: blast reverse|threshold: 0.5 reverse|flip: yes savelog: True |
name: value name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.good.fasta HMP_MOCK.v35.align value |
| Test-5 |
fasta: amazon.fasta alignment|reference: HMP_MOCK.v35.align alignment|source: history reverse|threshold: 0.5 reverse|flip: yes savelog: True |
name: value name: value name: value name: value |
amazon.fasta HMP_MOCK.v35.align value |