| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.7.12 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.7.10 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.0.4 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/0.9 |
| sklearn_numeric_clustering |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| Galaxy-ML | 0.8.3 | package |
| Additional information about this tool |
python "$cluster_script" '$inputs'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|init: k-means++ input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|selected_algorithm: KMeans input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-2 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|init: random input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|selected_algorithm: KMeans input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-3 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|eps: 1.0 input_types|algorithm_options|options|algorithm: kd_tree input_types|algorithm_options|options|leaf_size: 10 input_types|algorithm_options|selected_algorithm: DBSCAN input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-4 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|threshold: 0.008 input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|selected_algorithm: Birch input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-5 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|branching_factor: 20 input_types|algorithm_options|selected_algorithm: Birch input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-6 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|copy: False input_types|algorithm_options|options|affinity: euclidean input_types|algorithm_options|selected_algorithm: AffinityPropagation input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-7 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|damping: 0.8 input_types|algorithm_options|selected_algorithm: AffinityPropagation input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-8 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|min_bin_freq: 3 input_types|algorithm_options|selected_algorithm: MeanShift input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-9 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|cluster_all: False input_types|algorithm_options|selected_algorithm: MeanShift input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-10 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|affinity: euclidean input_types|algorithm_options|options|linkage: average input_types|algorithm_options|selected_algorithm: AgglomerativeClustering input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-11 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|linkage: complete input_types|algorithm_options|selected_algorithm: AgglomerativeClustering input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-12 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|eigen_solver: arpack input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|options|n_neighbors: 12 input_types|algorithm_options|options|assign_labels: discretize input_types|algorithm_options|selected_algorithm: SpectralClustering input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-13 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|options|assign_labels: discretize input_types|algorithm_options|options|degree: 2 input_types|algorithm_options|selected_algorithm: SpectralClustering input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-14 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|tol: 0.5 input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|selected_algorithm: MiniBatchKMeans input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-15 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: ['2', '3', '4'] input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|n_init: 5 input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|options|batch_size: 10 input_types|algorithm_options|options|reassignment_ratio: 1.0 input_types|algorithm_options|selected_algorithm: MiniBatchKMeans input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-16 |
input_types|infile: numeric_values.tabular input_types|column_selector_options|col: 1 input_types|algorithm_options|options|n_clusters: 4 input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|selected_algorithm: KMeans input_types|selected_input_type: tabular |
name: value |
numeric_values.tabular value |
| Test-17 |
input_types|infile: sparse.mtx input_types|algorithm_options|options|n_clusters: 2 input_types|algorithm_options|options|init: k-means++ input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|selected_algorithm: KMeans input_types|selected_input_type: sparse |
name: value |
sparse.mtx value |
| Test-18 |
input_types|infile: sparse.mtx input_types|algorithm_options|options|eps: 1.0 input_types|algorithm_options|options|algorithm: kd_tree input_types|algorithm_options|options|leaf_size: 10 input_types|algorithm_options|selected_algorithm: DBSCAN input_types|selected_input_type: sparse |
name: value |
sparse.mtx value |
| Test-19 |
input_types|infile: sparse.mtx input_types|algorithm_options|options|threshold: 0.008 input_types|algorithm_options|options|n_clusters: 2 input_types|algorithm_options|selected_algorithm: Birch input_types|selected_input_type: sparse |
name: value |
sparse.mtx value |
| Test-20 |
input_types|infile: sparse.mtx input_types|algorithm_options|options|n_clusters: 2 input_types|algorithm_options|options|n_init: 5 input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|options|batch_size: 10 input_types|algorithm_options|options|reassignment_ratio: 1.0 input_types|algorithm_options|selected_algorithm: MiniBatchKMeans input_types|selected_input_type: sparse |
name: value |
sparse.mtx value |
| Test-21 |
input_types|infile: sparse.mtx input_types|algorithm_options|options|n_clusters: 2 input_types|algorithm_options|options|random_state: 100 input_types|algorithm_options|options|assign_labels: discretize input_types|algorithm_options|options|degree: 2 input_types|algorithm_options|selected_algorithm: SpectralClustering input_types|selected_input_type: sparse |
name: value |
sparse.mtx value |