Repository revision
37:e13a7c05b3a4

Repository 'sklearn_numeric_clustering'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering

Numeric Clustering tool metadata
Miscellaneous
sklearn_numeric_clustering
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.3
1.0.8.3
echo "1.0.8.3"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.3 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.2
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.7.12
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.7.10
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.0.4
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/0.9
sklearn_numeric_clustering
Requirements (dependencies defined in the <requirements> tag set)
name version type
Galaxy-ML 0.8.3 package
Additional information about this tool
python "$cluster_script" '$inputs'

    
None
False
False
Functional tests
name inputs outputs required files
Test-1 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|init: k-means++
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|selected_algorithm: KMeans
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-2 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|init: random
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|selected_algorithm: KMeans
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-3 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|eps: 1.0
input_types|algorithm_options|options|algorithm: kd_tree
input_types|algorithm_options|options|leaf_size: 10
input_types|algorithm_options|selected_algorithm: DBSCAN
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-4 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|threshold: 0.008
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|selected_algorithm: Birch
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-5 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|branching_factor: 20
input_types|algorithm_options|selected_algorithm: Birch
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-6 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|copy: False
input_types|algorithm_options|options|affinity: euclidean
input_types|algorithm_options|selected_algorithm: AffinityPropagation
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-7 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|damping: 0.8
input_types|algorithm_options|selected_algorithm: AffinityPropagation
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-8 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|min_bin_freq: 3
input_types|algorithm_options|selected_algorithm: MeanShift
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-9 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|cluster_all: False
input_types|algorithm_options|selected_algorithm: MeanShift
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-10 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|affinity: euclidean
input_types|algorithm_options|options|linkage: average
input_types|algorithm_options|selected_algorithm: AgglomerativeClustering
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-11 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|linkage: complete
input_types|algorithm_options|selected_algorithm: AgglomerativeClustering
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-12 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|eigen_solver: arpack
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|options|n_neighbors: 12
input_types|algorithm_options|options|assign_labels: discretize
input_types|algorithm_options|selected_algorithm: SpectralClustering
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-13 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|options|assign_labels: discretize
input_types|algorithm_options|options|degree: 2
input_types|algorithm_options|selected_algorithm: SpectralClustering
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-14 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|tol: 0.5
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|selected_algorithm: MiniBatchKMeans
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-15 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: ['2', '3', '4']
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|n_init: 5
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|options|batch_size: 10
input_types|algorithm_options|options|reassignment_ratio: 1.0
input_types|algorithm_options|selected_algorithm: MiniBatchKMeans
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-16 input_types|infile: numeric_values.tabular
input_types|column_selector_options|col: 1
input_types|algorithm_options|options|n_clusters: 4
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|selected_algorithm: KMeans
input_types|selected_input_type: tabular
name: value
numeric_values.tabular
value
Test-17 input_types|infile: sparse.mtx
input_types|algorithm_options|options|n_clusters: 2
input_types|algorithm_options|options|init: k-means++
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|selected_algorithm: KMeans
input_types|selected_input_type: sparse
name: value
sparse.mtx
value
Test-18 input_types|infile: sparse.mtx
input_types|algorithm_options|options|eps: 1.0
input_types|algorithm_options|options|algorithm: kd_tree
input_types|algorithm_options|options|leaf_size: 10
input_types|algorithm_options|selected_algorithm: DBSCAN
input_types|selected_input_type: sparse
name: value
sparse.mtx
value
Test-19 input_types|infile: sparse.mtx
input_types|algorithm_options|options|threshold: 0.008
input_types|algorithm_options|options|n_clusters: 2
input_types|algorithm_options|selected_algorithm: Birch
input_types|selected_input_type: sparse
name: value
sparse.mtx
value
Test-20 input_types|infile: sparse.mtx
input_types|algorithm_options|options|n_clusters: 2
input_types|algorithm_options|options|n_init: 5
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|options|batch_size: 10
input_types|algorithm_options|options|reassignment_ratio: 1.0
input_types|algorithm_options|selected_algorithm: MiniBatchKMeans
input_types|selected_input_type: sparse
name: value
sparse.mtx
value
Test-21 input_types|infile: sparse.mtx
input_types|algorithm_options|options|n_clusters: 2
input_types|algorithm_options|options|random_state: 100
input_types|algorithm_options|options|assign_labels: discretize
input_types|algorithm_options|options|degree: 2
input_types|algorithm_options|selected_algorithm: SpectralClustering
input_types|selected_input_type: sparse
name: value
sparse.mtx
value