| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.22.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.7.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.6.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.5.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.4.1 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.4.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.2.0 |
| toolshed.g2.bx.psu.edu/repos/artbio/probecoverage/probecoverage/0.1.0 |
| probecoverage |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| pysam | 0.22.0 | package |
| bedtools | 2.31.1 | package |
| r-optparse | 1.7.4 | package |
| r-ggplot2 | 3.4.4 | package |
| r-reshape2 | 1.4.4 | package |
| numpy | 1.26.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputs: ['sample1', 'sample2', 'sample3'] bed: probes.bed method: False |
name: value name: value |
sample1 sample2 sample3 probes.bed value |
| Test-2 |
inputs: ['sample1', 'sample2', 'sample3'] bed: probes.bed method: True |
name: value name: value |
sample1 sample2 sample3 probes.bed value |