| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.8.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.6.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.4.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.2 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.0 |
| staramr_search |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| staramr | 0.7.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa use_pointfinder: salmonella |
name: value name: value name: value name: value name: value |
16S-rc_gyrA-rc_beta-lactam.fsa value |
| Test-2 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa |
name: value name: value |
16S-rc_gyrA-rc_beta-lactam.fsa value |
| Test-3 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa advanced|mlst_scheme: kpneumoniae |
name: value |
16S-rc_gyrA-rc_beta-lactam.fsa value |
| Test-4 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa advanced|pid_threshold: 99.8 |
name: value |
16S-rc_gyrA-rc_beta-lactam.fsa value |
| Test-5 |
genomes: 16S rc_gyrA rc_beta-lactam spaces (extra:characters).fsa advanced|pid_threshold: 99.8 |
name: value |
16S rc_gyrA rc_beta-lactam spaces (extra:characters).fsa value |
| Test-6 |
genomes: test-aminoglycoside.fsa |
name: value |
test-aminoglycoside.fsa value |
| Test-7 |
genomes: test-aminoglycoside.fsa advanced|exclude_genes|exclude_genes_condition: none |
name: value |
test-aminoglycoside.fsa value |
| Test-8 |
genomes: test-aminoglycoside.fsa advanced|exclude_genes|exclude_genes_file: genes_to_exclude.tsv advanced|exclude_genes|exclude_genes_condition: custom |
name: value |
test-aminoglycoside.fsa genes_to_exclude.tsv value |
| Test-9 |
genomes: test-aminoglycoside.fsa advanced|genome_size_lower_bound: 1 advanced|genome_size_upper_bound: 10 |
name: value |
test-aminoglycoside.fsa value |