| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.6.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.4.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.2 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.1 |
| toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.2.0 |
| staramr_search |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| staramr | 0.5.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa use_pointfinder: salmonella |
attributes: name attributes: name attributes: name attributes: name attributes: name |
16S-rc_gyrA-rc_beta-lactam.fsa name |
| Test-2 |
genomes: 16S-rc_gyrA-rc_beta-lactam.fsa |
attributes: name attributes: name |
16S-rc_gyrA-rc_beta-lactam.fsa name |
| Test-3 |
advanced|pid_threshold: 99.8 genomes: 16S-rc_gyrA-rc_beta-lactam.fsa |
attributes: name |
16S-rc_gyrA-rc_beta-lactam.fsa name |
| Test-4 |
advanced|pid_threshold: 99.8 genomes: 16S rc_gyrA rc_beta-lactam spaces (extra:characters).fsa |
attributes: name |
16S rc_gyrA rc_beta-lactam spaces (extra:characters).fsa name |
| Test-5 |
genomes: test-aminoglycoside.fsa |
attributes: name |
test-aminoglycoside.fsa name |
| Test-6 |
genomes: test-aminoglycoside.fsa advanced|exclude_genes|exclude_genes_condition: none |
attributes: name |
test-aminoglycoside.fsa name |
| Test-7 |
advanced|exclude_genes|exclude_genes_file: genes_to_exclude.tsv genomes: test-aminoglycoside.fsa advanced|exclude_genes|exclude_genes_condition: custom |
attributes: name |
test-aminoglycoside.fsa genes_to_exclude.tsv name |