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Repository revision

Revision: 9:3f529510975e

Repository 'hicexplorer_hictransform'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform

hicTransform tool metadata

Miscellaneous

Name: hicTransform

Description: transform a matrix to obs/exp, pearson and covariance matrices

Id: hicexplorer_hictransform

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.4.1.0

Version: 3.4.1.0

Version command string: hicTransform --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.4.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.3.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.0.1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/2.0.0

hicexplorer_hictransform

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.1

package

Functional tests

name

inputs

outputs

required files

Test-1

method_selector: obs_exp_lieberman
matrix_h5_cooler: small_test_matrix.h5

attributes: name

small_test_matrix.h5
name

Test-2

matrix_h5_cooler: small_test_matrix.h5
method_selector: obs_exp_lieberman
ligation_factor: True

attributes: name

small_test_matrix.h5
name