| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_bam_to_cram/samtools_bam_to_cram/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_bam_to_cram/samtools_bam_to_cram/1.13 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_bam_to_cram/samtools_bam_to_cram/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_bam_to_cram/samtools_bam_to_cram/1.3.1 |
| samtools_bam_to_cram |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.13 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: test.bam addref_cond|ref: test.fa addref_cond|addref_select: history parameter_regions|target_region: entire_input_file |
name: value |
test.bam test.fa value |
| Test-2 |
input: test.sam addref_cond|ref: test.fa addref_cond|addref_select: history parameter_regions|target_region: entire_input_file |
name: value |
test.sam test.fa value |
| Test-3 |
input: test.bam addref_cond|ref: test.fa addref_cond|addref_select: history parameter_regions|region_string: CHROMOSOME_I parameter_regions|target_region: region |
name: value |
test.bam test.fa value |
| Test-4 |
input: test.bam addref_cond|ref: test.fa addref_cond|addref_select: history parameter_regions|regions_bed_file: test.bed parameter_regions|target_region: regions_bed_file |
name: value |
test.bam test.fa test.bed value |
| Test-5 |
input: sam_to_bam_out2.bam addref_cond|ref: equCab2chrM addref_cond|addref_select: cached parameter_regions|target_region: entire_input_file |
name: value |
sam_to_bam_out2.bam value |