| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/4.0.1 (this tool) |
| flanking_features_1 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bx-python | 0.7.1 | package |
| galaxy-ops | 1.0.0 | package |
| Additional information about this tool |
python '$__tool_directory__/flanking_features.py'
'$input1'
'$input2'
'$out_file1'
$direction
#if $input1.is_of_type('gff')
-1 1,4,5,7 --gff1
#else:
-1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
#end if
#if $input2.is_of_type('gff')
-2 1,4,5,7 --gff2
#else:
-2 ${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol}
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: 4_windows.bed input2: 4_windows_2.bed direction: Either |
name: value |
4_windows.bed 4_windows_2.bed value |
| Test-2 |
input1: 4_windows.bed input2: 4_windows_2.bed direction: Both |
name: value |
4_windows.bed 4_windows_2.bed value |
| Test-3 |
input1: 4_windows.bed input2: 4_windows_2.bed direction: Upstream |
name: value |
4_windows.bed 4_windows_2.bed value |
| Test-4 |
input1: 4_windows.bed input2: 4_windows_2.bed direction: Downstream |
name: value |
4_windows.bed 4_windows_2.bed value |
| Test-5 |
input1: 4_windows.bed input2: 4_windows_3.bed direction: Both |
name: value |
4_windows.bed 4_windows_3.bed value |
| Test-6 |
input1: 4_windows.bed input2: 4_windows_2.gff direction: Either |
name: value |
4_windows.bed 4_windows_2.gff value |
| Test-7 |
input1: 4_windows.gff input2: 4_windows_2.gff direction: Either |
name: value |
4_windows.gff 4_windows_2.gff value |