Repository revision
8:f338e9942b27

Repository 'metaspades'
hg clone https://toolshed.g2.bx.psu.edu/repos/nml/metaspades

metaSPAdes tool metadata
Miscellaneous
metaSPAdes
metagenome assembler
metaspades
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.3+galaxy1
3.15.3+galaxy1
spades.py --version 2>&1 | awk -F 'v' '{print $2}'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.3+galaxy2
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.3+galaxy0
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0.1
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/1.0
metaspades
Requirements (dependencies defined in the <requirements> tag set)
name version type
spades 3.15.3 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 singlePaired|input1: ecoli_1K.fastq.gz
singlePaired|sPaired: paired_interlaced
name: value
name: value
name: value
name: value
ecoli_1K.fastq.gz
value
Test-2 singlePaired|input1: ecoli_1K_1.fastq.gz
singlePaired|input2: ecoli_1K_2.fastq.gz
singlePaired|sPaired: paired
name: value
name: value
name: value
name: value
ecoli_1K_1.fastq.gz
ecoli_1K_2.fastq.gz
value
Test-3 singlePaired|input1: ecoli_1K.fastq.gz
singlePaired|sPaired: paired_interlaced
optional_output: ['cr', 'l']
name: value
ecoli_1K.fastq.gz
value