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Repository revision

Revision: 5:85e38b31e8b3

Repository 'samtools_reheader'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader

Samtools reheader tool metadata

Miscellaneous

Name: Samtools reheader

Description: copy SAM/BAM header between datasets

Id: samtools_reheader

Guid: toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0.3

Version: 2.0.3

Version command string: samtools 2>&1 | grep Version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0.3 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0.2

toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0.1+galaxy1

toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0.1

toolshed.g2.bx.psu.edu/repos/devteam/samtools_reheader/samtools_reheader/2.0

samtools_reheader

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

1.20

package

Additional information about this tool

Command:

samtools reheader
            '${input_header}'
            '${input_file}'
            ${no_pg}
            > '${output}'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

input_header: reheader_input_header.bam
input_file: reheader_input_file.bam

name: value

reheader_input_header.bam
reheader_input_file.bam
value

Test-2

input_header: reheader_input_header.bam
input_file: reheader_input_file.bam
no_pg: True

name: value

reheader_input_header.bam
reheader_input_file.bam
value