| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_markdup/sambamba_markdup/1.0.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_markdup/sambamba_markdup/1.0.1+galaxy1 |
| sambamba_markdup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sambamba | 1.0.1 | package |
| Additional information about this tool |
sambamba markdup
$remove_duplicates
-l $compression_level
'${input_bam}'
'${output}'
--nthreads \${GALAXY_SLOTS:-4}
--tmpdir '\${TMPDIR:-.}'
#if $log_out
2>&1 | tee '${log}'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: 2.bam compression_level: 5 remove_duplicates: False log_out: True |
name: value name: value |
2.bam value |
| Test-2 |
input_bam: 2.bam compression_level: 5 remove_duplicates: True log_out: False |
name: value |
2.bam value |