| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.3 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.0 |
| cardinal_classification |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-cardinal | 1.12.1 | package |
| r-base | 3.5.1 | package |
| r-ggplot2 | 3.0 | package |
| r-gridextra | 2.3 | package |
| r-lattice | 0.20_35 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
type_cond|method_cond|class_method: PLS type_cond|type_method: training type_cond|method_cond|analysis_cond|PLS_method: cvapply type_cond|method_cond|analysis_cond|plscv_comp: 2:4 type_cond|column_fold: 3 type_cond|column_response: 4 type_cond|column_x: 1 type_cond|column_y: 2 type_cond|annotation_file: pixel_annotation_file1.tabular type_cond|tabular_header: False infile: testfile_squares.rdata |
attributes: name attributes: name attributes: name |
testfile_squares.rdata pixel_annotation_file1.tabular name |
| Test-2 |
output_rdata: True type_cond|method_cond|class_method: PLS type_cond|type_method: training type_cond|method_cond|analysis_cond|PLS_method: PLS_analysis type_cond|method_cond|analysis_cond|pls_toplabels: 100 type_cond|column_response: 4 type_cond|method_cond|analysis_cond|pls_scale: True type_cond|column_x: 1 type_cond|column_y: 2 type_cond|annotation_file: pixel_annotation_file1.tabular type_cond|method_cond|analysis_cond|pls_comp: 2 type_cond|tabular_header: False infile: testfile_squares.rdata |
attributes: name attributes: name attributes: name attributes: name |
testfile_squares.rdata pixel_annotation_file1.tabular name |
| Test-3 |
type_cond|method_cond|class_method: OPLS type_cond|method_cond|opls_analysis_cond|opls_cvcomp: 1:2 type_cond|type_method: training type_cond|column_response: 4 type_cond|column_fold: 3 type_cond|column_x: 1 type_cond|column_y: 2 type_cond|annotation_file: random_factors.tabular type_cond|method_cond|opls_analysis_cond|xnew_cv: False type_cond|tabular_header: False infile: testfile_squares.rdata type_cond|method_cond|opls_analysis_cond|opls_method: opls_cvapply |
attributes: name attributes: name attributes: name |
testfile_squares.rdata random_factors.tabular name |
| Test-4 |
output_rdata: True type_cond|method_cond|class_method: OPLS type_cond|type_method: training type_cond|method_cond|opls_analysis_cond|opls_scale: False type_cond|column_response: 4 type_cond|method_cond|opls_analysis_cond|opls_comp: 3 type_cond|method_cond|opls_analysis_cond|xnew: False type_cond|method_cond|opls_analysis_cond|opls_toplabels: 100 type_cond|column_x: 1 type_cond|column_y: 2 type_cond|annotation_file: random_factors.tabular type_cond|tabular_header: False infile: testfile_squares.rdata type_cond|method_cond|opls_analysis_cond|opls_method: opls_analysis |
attributes: name attributes: name attributes: name attributes: name |
testfile_squares.rdata random_factors.tabular name |
| Test-5 |
type_cond|method_cond|ssc_analysis_cond|ssc_method: ssc_cvapply type_cond|type_method: training type_cond|method_cond|class_method: spatialShrunkenCentroids type_cond|column_fold: 4 type_cond|column_response: 3 type_cond|column_x: 1 type_cond|column_y: 2 type_cond|annotation_file: pixel_annotation_file1.tabular type_cond|tabular_header: False infile: testfile_squares.rdata |
attributes: name attributes: name attributes: name |
testfile_squares.rdata pixel_annotation_file1.tabular name |
| Test-6 |
output_rdata: True type_cond|method_cond|class_method: spatialShrunkenCentroids type_cond|type_method: training type_cond|method_cond|ssc_kernel_method: adaptive infile: testfile_squares.rdata type_cond|method_cond|ssc_r: 2 type_cond|method_cond|ssc_analysis_cond|ssc_toplabels: 20 type_cond|column_response: 4 type_cond|method_cond|ssc_s: 2 type_cond|column_x: 1 type_cond|column_y: 2 type_cond|method_cond|ssc_analysis_cond|ssc_method: ssc_analysis type_cond|annotation_file: random_factors.tabular |
attributes: name attributes: name attributes: name attributes: name |
testfile_squares.rdata random_factors.tabular name |
| Test-7 |
output_rdata: True type_cond|type_method: prediction type_cond|training_result: test2.rdata type_cond|new_y_values_cond|new_tabular_header: False type_cond|new_y_values_cond|column_new_response: 4 type_cond|new_y_values_cond|column_new_y: 2 type_cond|new_y_values_cond|column_new_x: 1 type_cond|new_y_values_cond|new_response_file: pixel_annotation_file1.tabular type_cond|new_y_values_cond|new_y_values: new_response infile: testfile_squares.rdata |
attributes: name attributes: name attributes: name attributes: name |
testfile_squares.rdata test2.rdata pixel_annotation_file1.tabular name |