| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.7.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.6+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.3.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.4.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.0.0 |
| hicexplorer_hicpca |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix_h5_cooler: small_test_matrix.cool outputFormat: bigwig extra_track_conditional|extra_track_selection: |
name: value name: value |
small_test_matrix.cool value |
| Test-2 |
matrix_h5_cooler: small_test_matrix.cool outputFormat: bigwig ligation_factor: True extra_track_conditional|extra_track_selection: |
name: value name: value |
small_test_matrix.cool value |
| Test-3 |
matrix_h5_cooler: small_test_matrix.cool outputFormat: bigwig ignoreMaskedBins: True extra_track_conditional|extra_track_selection: |
name: value name: value |
small_test_matrix.cool value |
| Test-4 |
matrix_h5_cooler: small_test_matrix.h5 outputFormat: bigwig chromosome_list_0|chromosomes: chrX chromosome_list_1|chromosomes: chrXHet extra_track_conditional|extraTrack: dm3_genes.bed.gz extra_track_conditional|extra_track_selection: gene_density |
name: value name: value |
small_test_matrix.h5 dm3_genes.bed.gz value |
| Test-5 |
matrix_h5_cooler: small_test_matrix.h5 outputFormat: bigwig chromosome_list_0|chromosomes: chrX chromosome_list_1|chromosomes: chrXHet extra_track_conditional|extra_track_selection: pearsonMatrix: True obsexpMatrix: True |
name: value name: value name: value name: value |
small_test_matrix.h5 value |