| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.1+galaxy0 |
| medaka_consensus_pipeline |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| medaka | 1.0.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
i: basecalls.fastq d: assembly.fasta |
attributes: name attributes: name attributes: name |
basecalls.fastq assembly.fasta name |
| Test-2 |
i: basecalls.fastq b: 99 m: r941_min_fast_g303 d: assembly.fasta out: ['consensus', 'probs', 'calls', 'draft', 'variants', 'polished', 'log'] |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
basecalls.fastq assembly.fasta name |