Repository revision
15:79e9a869f40e

Repository 'medaka_consensus_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline

medaka consensus pipeline tool metadata
Miscellaneous
Assembly polishing via neural networks
medaka_consensus_pipeline
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.7.2+galaxy0
1.7.2+galaxy0
medaka --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.7.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.4.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.4.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.3.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.0.1+galaxy0
medaka_consensus_pipeline
Requirements (dependencies defined in the <requirements> tag set)
name version type
medaka 1.7.2 package
Functional tests
name inputs outputs required files
Test-1 i: basecalls.fastq.gz
d: assembly.fasta
name: value
name: value
name: value
basecalls.fastq.gz
assembly.fasta
value
Test-2 i: basecalls.fastq.gz
d: assembly.fasta
m: r941_min_fast_g303
b: 99
out: ['consensus', 'probs', 'calls', 'log', 'gaps']
name: value
name: value
name: value
name: value
name: value
basecalls.fastq.gz
assembly.fasta
value