Repository revision
20:c42c2b540ced

Repository 'scanpy_compute_graph'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph

Scanpy ComputeGraph tool metadata
Miscellaneous
to derive kNN graph
scanpy_compute_graph
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.7.2+galaxy0
1.7.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.7.2+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy4
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy3
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy2
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy11
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy10
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy8
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.3.2+galaxy1
scanpy_compute_graph
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 0.4.0 package
Functional tests
name inputs outputs required files
Test-1 input_obj_file: run_pca.h5
input_format: anndata
output_format: anndata
settings|n_neighbors_file: n_neighbors.txt
settings|n_pcs: 50
settings|knn: True
settings|method: umap
settings|random_seed: 0
settings|default: False
name: value
run_pca.h5
n_neighbors.txt
value
Test-2 input_obj_file: run_pca.h5
input_format: anndata
output_format: anndata
settings|n_neighbors: 15
settings|n_pcs: 50
settings|knn: True
settings|method: umap
settings|random_seed: 0
settings|default: False
name: value
run_pca.h5
value