Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.1.2 |
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.1.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.0.0b35 |
ete_lineage_generator |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
ete3 | 3.1.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
compresscond|compress: speciesFile: species.txt ranks|levels: full database: taxdump.sqlite |
attributes: name |
species.txt taxdump.sqlite name |
Test-2 |
compresscond|compress: -c speciesFile: species.txt ranks|levels: primary database: taxdump.sqlite |
attributes: name |
species.txt taxdump.sqlite name |
Test-3 |
compresscond|compress: -c speciesFile: species.txt compresscond|lower: True ranks|levels: primary database: taxdump.sqlite |
attributes: name |
species.txt taxdump.sqlite name |
Test-4 |
compresscond|compress: speciesFile: species.txt database: taxdump.sqlite ranks|levels: manual ranks|manualranks: ['kingdom', 'family'] |
attributes: name |
species.txt taxdump.sqlite name |
Test-5 |
includeid: True speciesFile: species.txt database: taxdump.sqlite |
attributes: name |
species.txt taxdump.sqlite name |