Repository revision
7:6a5282f71f82

Repository 'ete'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/ete

ETE lineage generator tool metadata
Miscellaneous
from a list of species/taxids using the ETE Toolkit
ete_lineage_generator
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.1.1
3.1.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.1.2
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.1.1 (this tool)
toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_lineage_generator/3.0.0b35
ete_lineage_generator
Requirements (dependencies defined in the <requirements> tag set)
name version type
ete3 3.1.1 package
Functional tests
name inputs outputs required files
Test-1 compresscond|compress:
speciesFile: species.txt
ranks|levels: full
database: taxdump.sqlite
attributes: name
species.txt
taxdump.sqlite
name
Test-2 compresscond|compress: -c
speciesFile: species.txt
ranks|levels: primary
database: taxdump.sqlite
attributes: name
species.txt
taxdump.sqlite
name
Test-3 compresscond|compress: -c
speciesFile: species.txt
compresscond|lower: True
ranks|levels: primary
database: taxdump.sqlite
attributes: name
species.txt
taxdump.sqlite
name
Test-4 compresscond|compress:
speciesFile: species.txt
database: taxdump.sqlite
ranks|levels: manual
ranks|manualranks: ['kingdom', 'family']
attributes: name
species.txt
taxdump.sqlite
name
Test-5 includeid: True
speciesFile: species.txt
database: taxdump.sqlite
attributes: name
species.txt
taxdump.sqlite
name