| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete3_mod/3.1.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete3_mod/3.0.0b35 |
| ete3_mod |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ete3 | 3.1.3 | package |
| sqlite | 3.40 | package |
| Additional information about this tool |
ete3 mod -t
#for $input_tree in $input_trees:
'$input_tree'
#end for
-v '$verbosity'
#if $outgroup:
--outgroup '$outgroup'
#end if
## #if float($ultrametric) > 0.0:
## --ultrametric $ultrametric
## #end if
#if $prune:
#set node_list = "'" + "' '".join($prune.split(',')) + "'"
--prune $node_list
#end if
$prune_preserve_lengths
$unroot
$sort_branches
$ladderize
$resolve_polytomies
$standardize
> '$output_tree'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_trees: tree1.nhx outgroup: A |
name: value |
tree1.nhx value |
| Test-2 |
input_trees: tree1.nhx prune: A,C |
name: value |
tree1.nhx value |
| Test-3 |
input_trees: tree1.nhx prune: A,C prune_preserve_lengths: True |
name: value |
tree1.nhx value |
| Test-4 |
input_trees: tree1.nhx unroot: True |
name: value |
tree1.nhx value |
| Test-5 |
input_trees: tree2.nhx sort_branches: True |
name: value |
tree2.nhx value |
| Test-6 |
input_trees: tree1.nhx ladderize: True |
name: value |
tree1.nhx value |
| Test-7 |
input_trees: tree1_unroot.nhx resolve_polytomies: True |
name: value |
tree1_unroot.nhx value |
| Test-8 |
input_trees: tree3.nhx standardize: True |
name: value |
tree3.nhx value |