| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_genetree_splitter/3.1.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_genetree_splitter/3.0.0b35.1 |
| ete_genetree_splitter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ete3 | 3.1.3 | package |
| sqlite | 3.40 | package |
| Additional information about this tool |
python '$__tool_directory__/ete_genetree_splitter.py'
--genetree '$genetreeFile'
--gene_node $gene_node
--split $splitting_conditional.splitter
#if $gainlose_conditional.gainlose == "True"
--speciestree '$gainlose_conditional.speciesFile'
--species_format $gainlose_conditional.species_format
--gainlose
#end if
#if $splitting_conditional.splitter == "species"
--ingroup '$splitting_conditional.ingroup'
--outgroup '$splitting_conditional.outgroup'
#end if
--output_format $output_format
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genetreeFile: genetree.nhx gene_node: 0 splitting_conditional|splitter: dups output_format: 9 |
genetree.nhx |
|
| Test-2 |
genetreeFile: genetree.nhx gene_node: 0 splitting_conditional|splitter: dups gainlose_conditional|speciesFile: speciestree.nhx gainlose_conditional|species_format: 8 gainlose_conditional|gainlose: True output_format: 9 |
genetree.nhx speciestree.nhx |
|
| Test-3 |
genetreeFile: genetree.nhx gene_node: 0 splitting_conditional|splitter: treeko output_format: 9 |
genetree.nhx |
|
| Test-4 |
genetreeFile: genetree.nhx gene_node: 0 splitting_conditional|ingroup: pantroglodytes,homosapiens,rattusnorvegicus,musmusculus,canisfamiliaris splitting_conditional|outgroup: susscrofa splitting_conditional|splitter: species output_format: 9 |
genetree.nhx |