Repository revision
0:d67642a21a1d

Repository 'pharmcat'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat

pharmCAT tool metadata
Miscellaneous
pharmCAT
Pharmacogenomics Clinical Annotation Tool
pharmcat
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.3.1+galaxy0
1.3.1+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.7.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/pharmcat/pharmcat/1.3.1+galaxy0 (this tool)
pharmcat
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 function_select|input: test.vcf
function_select|outside_call: test.tsv
function_select|json: True
function_select|phenojson: True
name: value
name: value
name: value
test.vcf
test.tsv
value
Test-2 function_select|input: test.vcf
function_select|function: name
name: value
name: value
test.vcf
value
Test-3 function_select|method|input: test.vcf
function_select|method|pheno_function: vcf
function_select|outside_call: test.tsv
function_select|function: pheno
name: value
test.vcf
test.tsv
value
Test-4 function_select|method|input: test_2.json
function_select|method|pheno_function: named
function_select|function: pheno
name: value
test_2.json
value
Test-5 function_select|input: test_3.json
function_select|function: report
name: value
name: value
test_3.json
value