| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_fast5_subset/ont_fast5_api_fast5_subset/3.1.3+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_fast5_subset/ont_fast5_api_fast5_subset/3.1.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_fast5_subset/ont_fast5_api_fast5_subset/3.1.3+galaxy0 |
| ont_fast5_api_fast5_subset |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ont-fast5-api | 3.1.3 | package |
| hdf5 | 1.10.5 | package |
| Additional information about this tool |
## initialize
mkdir -p './data' &&
tar -xf '$input' -C './data' &&
## run
fast5_subset
--recursive
## required
--input './data'
--save_path './results'
--read_id_list '$read_id_list'
## optional
#if $compression != 'none'
--compression '$compression'
#end if
--batch_size $batch_size
--threads \${GALAXY_SLOTS:-4}
## create tarball
&& find './results' -type f -name '*.fast5' | tar --transform 's/.*\///g' -cvf './results.fast5.tar' --files-from=/dev/stdin
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: multi.fast5.tar read_id_list: list.txt |
name: value |
multi.fast5.tar list.txt value |
| Test-2 |
input: multi.fast5.tar read_id_list: list.txt batch_size: 2 compression: gzip |
name: value |
multi.fast5.tar list.txt value |
| Test-3 |
input: multi.fast5.tar read_id_list: list.txt compression: vbz |
name: value |
multi.fast5.tar list.txt value |
| Test-4 |
input: multi.fast5.tar read_id_list: list.txt compression: vbz_legacy_v0 |
name: value |
multi.fast5.tar list.txt value |