Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_nucleicacidsearchengine/NucleicAcidSearchEngine/2.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_nucleicacidsearchengine/NucleicAcidSearchEngine/2.6+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_nucleicacidsearchengine/NucleicAcidSearchEngine/2.5+galaxy0 |
NucleicAcidSearchEngine |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.6 | package |
openms-thirdparty | 2.6 | package |
blast | 2.9.0 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: NucleicAcidSearchEngine_1.mzML database: NucleicAcidSearchEngine_1.fasta precursor|mass_tolerance: 5.0 precursor|mass_tolerance_unit: ppm precursor|min_charge: -2 precursor|max_charge: -14 precursor|include_unknown_charge: True precursor|use_avg_mass: False precursor|use_adducts: False precursor|potential_adducts: "K:+" "Na:+" "Na2:++" "K2:++" "NaK:++" "K3:+++" "Na3:+++" "NaK2:+++" "Na2K:+++" precursor|isotopes: 0 1 2 fragment|mass_tolerance: 5.0 fragment|mass_tolerance_unit: ppm fragment|ions: ['a-B', 'c', 'w', 'y'] modifications|variable: modifications|variable_max_per_oligo: 2 modifications|resolve_ambiguities: False oligo|min_size: 5 oligo|max_size: 0 oligo|missed_cleavages: 22 oligo|enzyme: no cleavage report|top_hits: 1 fdr|decoy_pattern: DECOY_ fdr|cutoff: 0.05 fdr|remove_decoys: True adv_opts_cond|decharge_ms2: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'id_out_FLAG'] |
name: value name: value name: value |
NucleicAcidSearchEngine_1.mzML NucleicAcidSearchEngine_1.fasta value |