| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.19.7.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.18.6.0 |
| bioext_bealign |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python-bioext | 0.20.2 | package |
| gawk | 5.1.0 | package |
| samtools | 1.14 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: query.fa select_reference|reference: reference.fa select_reference|reference_type: dataset advanced|score_matrix: HIV_BETWEEN_F |
name: value |
query.fa reference.fa value |
| Test-2 |
input: query.fa select_reference|reference: CoV2-nsp8 select_reference|reference_type: preset advanced|score_matrix: HIV_BETWEEN_F |
name: value |
query.fa value |
| Test-3 |
input: query.fa select_reference|reference: CoV2-nsp8 select_reference|reference_type: preset background_source|sequences: CoV2-nsp8 advanced|alphabet: codon advanced|score_matrix: HIV_BETWEEN_F |
name: value name: value |
query.fa value |
| Test-4 |
input: query.fa select_reference|reference: CoV2-nsp8 select_reference|save_reference: True select_reference|reference_type: preset advanced|alphabet: codon advanced|score_matrix: HIV_BETWEEN_F |
name: value name: value |
query.fa value |