Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.20.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.18.1.1 |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.18.1.0 |
gemini_roh |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
gemini | 0.20.1 | package |
Additional information about this tool |
gemini roh --min-snps $min_snps --min-total-depth $min_total_depth --min-gt-depth $min_gt_depth --min-size $min_size --max-hets $max_hets --max-unknowns $max_unknowns #if $samples.strip(): #set $samples = ','.join([f.strip() for f in $samples.split(',')]) -s '$samples' #end if '$infile' > '$outfile'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
infile: gemini_load_result1.db min_snps: 3 min_total_depth: 0 min_size: 10 |
name: value |
gemini_load_result1.db value |