Repository revision
3:93967598e18e

Repository 'gemini_roh'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh

GEMINI roh tool metadata
Miscellaneous
GEMINI roh
Identifying runs of homozygosity
gemini_roh
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.18.1.0
0.18.1.0
gemini --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.18.1.1
toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.18.1.0 (this tool)
gemini_roh
Requirements (dependencies defined in the <requirements> tag set)
name version type
gemini 0.18.1 package
tabix 0.2.6 package
Additional information about this tool
gemini roh
            --min-snps $min_snps
            --min-total-depth $min_total_depth
            --min-gt-depth $min_gt_depth
            --min-size $min_size
            --max-hets $max_hets
            --max-unknowns $max_unknowns
            #if $samples.strip():
                -s "${samples}"
            #end if
            "${ infile }"
            > "${ outfile }"

    
None
False
False
Functional tests
name inputs outputs required files
Test-1 min_size: 10
min_snps: 3
infile: gemini_burden_input.db
min_total_depth: 0
attributes: name
gemini_burden_input.db
name