| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.3 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.7.12 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.7.10 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.0.4 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/0.9 |
| sklearn_searchcv |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.6 | package |
| Galaxy-ML | 0.8.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: [1, 10, 100, 1000] search_schemes|search_params_builder|param_set_1|sp_name: selectkbest__k search_schemes|search_params_builder|param_set_1|sp_list: [-1, 3, 5, 7, 9] search_schemes|options|error_score: False search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular value |
| Test-2 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: [1, 10, 100, 1000] search_schemes|search_params_builder|param_set_1|sp_name: selectkbest__k search_schemes|search_params_builder|param_set_1|sp_list: [-1, 3, 5, 7, 9] search_schemes|options|error_score: True search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular |
|
| Test-3 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: [1, 10, 100, 1000] search_schemes|search_params_builder|param_set_1|sp_name: svr__kernel search_schemes|search_params_builder|param_set_1|sp_list: ['linear', 'poly', 'rbf', 'sigmoid'] search_schemes|search_params_builder|param_set_2|sp_name: selectkbest__k search_schemes|search_params_builder|param_set_2|sp_list: [3, 5, 7, 9] search_schemes|search_params_builder|param_set_3|sp_name: robustscaler__with_centering search_schemes|search_params_builder|param_set_3|sp_list: [True, False] search_schemes|selected_search_scheme: RandomizedSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular value |
| Test-4 |
search_schemes|infile_estimator: pipeline03 search_schemes|search_params_builder|infile_params: get_params03.tabular search_schemes|search_params_builder|param_set_0|sp_name: xgbclassifier__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: np_arange(50, 1001, 50) search_schemes|search_params_builder|param_set_1|sp_name: xgbclassifier__max_depth search_schemes|search_params_builder|param_set_1|sp_list: scipy_stats_randint(1, 51) search_schemes|search_params_builder|param_set_2|sp_name: xgbclassifier__gamma search_schemes|search_params_builder|param_set_2|sp_list: scipy_stats_uniform(0., 1.) search_schemes|search_params_builder|param_set_3|sp_name: xgbclassifier__random_state search_schemes|search_params_builder|param_set_3|sp_list: [324089] search_schemes|selected_search_scheme: RandomizedSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline03 get_params03.tabular regression_X.tabular regression_y.tabular value |
| Test-5 |
search_schemes|infile_estimator: pipeline04 search_schemes|search_params_builder|infile_params: get_params04.tabular search_schemes|search_params_builder|param_set_0|sp_name: linearsvc__random_state search_schemes|search_params_builder|param_set_0|sp_list: list(range(100, 1001, 100)) search_schemes|search_params_builder|param_set_1|sp_name: selectfrommodel__estimator search_schemes|search_params_builder|param_set_1|sp_list: : [sklearn_ensemble.ExtraTreesClassifier(n_estimators=100, random_state=324089)] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline04 get_params04.tabular regression_X.tabular regression_y.tabular value |
| Test-6 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: [1, 10, 100, 1000] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns save: save_estimator |
name: value |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular value |
| Test-7 |
search_schemes|infile_estimator: pipeline06 search_schemes|search_params_builder|infile_params: get_params06.tabular search_schemes|search_params_builder|param_set_0|sp_name: adaboostregressor__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 200, 1000] search_schemes|search_params_builder|param_set_1|sp_name: adaboostregressor__random_state search_schemes|search_params_builder|param_set_1|sp_list: [324089] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline06 get_params06.tabular regression_X.tabular regression_y.tabular value |
| Test-8 |
search_schemes|infile_estimator: pipeline07 search_schemes|search_params_builder|infile_params: get_params07.tabular search_schemes|search_params_builder|param_set_0|sp_name: adaboostclassifier__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 100, 200] search_schemes|search_params_builder|param_set_1|sp_name: adaboostclassifier__random_state search_schemes|search_params_builder|param_set_1|sp_list: [324089] search_schemes|search_params_builder|param_set_2|sp_name: rbfsampler__gamma search_schemes|search_params_builder|param_set_2|sp_list: [1.0, 2.0] search_schemes|options|cv_selector|n_splits: 3 search_schemes|options|cv_selector|selected_cv: default search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline07 get_params07.tabular regression_X.tabular regression_y.tabular value |
| Test-9 |
search_schemes|infile_estimator: pipeline08 search_schemes|search_params_builder|infile_params: get_params08.tabular search_schemes|search_params_builder|param_set_0|sp_name: adaboostclassifier__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 100, 200] search_schemes|search_params_builder|param_set_1|sp_name: adaboostclassifier__random_state search_schemes|search_params_builder|param_set_1|sp_list: [324089] search_schemes|search_params_builder|param_set_2|sp_name: featureagglomeration__linkage search_schemes|search_params_builder|param_set_2|sp_list: ['ward', 'complete', 'average'] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline08 get_params08.tabular regression_X.tabular regression_y.tabular value |
| Test-10 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: [1, 10, 100, 1000] search_schemes|options|cv_selector|n_splits: 3 search_schemes|options|cv_selector|shuffle: True search_schemes|options|cv_selector|random_state: 10 search_schemes|options|cv_selector|selected_cv: StratifiedKFold search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns save: save_estimator |
name: value |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular value |
| Test-11 |
search_schemes|infile_estimator: pipeline03 search_schemes|search_params_builder|infile_params: get_params03.tabular search_schemes|search_params_builder|param_set_0|sp_name: xgbclassifier__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 200, 1000] search_schemes|search_params_builder|param_set_1|sp_name: xgbclassifier__random_state search_schemes|search_params_builder|param_set_1|sp_list: [324089] search_schemes|options|scoring|primary_scoring: balanced_accuracy search_schemes|options|cv_selector|n_splits: 3 search_schemes|options|cv_selector|shuffle: True search_schemes|options|cv_selector|random_state: 10 search_schemes|options|cv_selector|selected_cv: StratifiedKFold search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline03 get_params03.tabular regression_X.tabular regression_y.tabular value |
| Test-12 |
search_schemes|infile_estimator: pipeline02 search_schemes|search_params_builder|infile_params: get_params02.tabular search_schemes|search_params_builder|param_set_0|sp_name: lassocv__eps search_schemes|search_params_builder|param_set_0|sp_list: [0.01, 0.001] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline02 get_params02.tabular regression_X.tabular regression_y.tabular value |
| Test-13 |
search_schemes|infile_estimator: pipeline05 search_schemes|search_params_builder|infile_params: get_params05.tabular search_schemes|search_params_builder|param_set_0|sp_name: n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 100, 300] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline05 get_params05.tabular regression_X.tabular regression_y.tabular value |
| Test-14 |
search_schemes|infile_estimator: pipeline01 search_schemes|search_params_builder|infile_params: get_params01.tabular search_schemes|search_params_builder|param_set_0|sp_name: svr__C search_schemes|search_params_builder|param_set_0|sp_list: open('~/.ssh/authorized_keys', 'r').read() search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
pipeline01 get_params01.tabular regression_X.tabular regression_y.tabular |
|
| Test-15 |
search_schemes|infile_estimator: pipeline10 search_schemes|search_params_builder|infile_params: get_params10.tabular search_schemes|search_params_builder|param_set_0|sp_name: adaboostregressor__base_estimator search_schemes|search_params_builder|param_set_0|sp_list: : [sklearn_tree.DecisionTreeRegressor(random_state=0), sklearn_tree.ExtraTreeRegressor(random_state=0)] search_schemes|search_params_builder|param_set_1|sp_name: adaboostregressor__random_state search_schemes|search_params_builder|param_set_1|sp_list: [10] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline10 get_params10.tabular regression_X.tabular regression_y.tabular value |
| Test-16 |
search_schemes|infile_estimator: pipeline09 search_schemes|search_params_builder|infile_params: get_params09.tabular search_schemes|search_params_builder|param_set_0|sp_name: relieff search_schemes|search_params_builder|param_set_0|sp_list: : [sklearn_feature_selection.SelectKBest(), sklearn_feature_selection.VarianceThreshold(), skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()] search_schemes|search_params_builder|param_set_1|sp_name: randomforestregressor__random_state search_schemes|search_params_builder|param_set_1|sp_list: [10] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline09 get_params09.tabular regression_X.tabular regression_y.tabular value |
| Test-17 |
search_schemes|infile_estimator: pipeline09 search_schemes|search_params_builder|infile_params: get_params09.tabular search_schemes|search_params_builder|param_set_0|sp_name: relieff search_schemes|search_params_builder|param_set_0|sp_list: : [None,'sk_prep_all', 7, 13, skrebate_ReliefF(n_features_to_select=12)] search_schemes|search_params_builder|param_set_1|sp_name: randomforestregressor__random_state search_schemes|search_params_builder|param_set_1|sp_list: [10] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline09 get_params09.tabular regression_X.tabular regression_y.tabular value |
| Test-18 |
search_schemes|infile_estimator: pipeline11 search_schemes|search_params_builder|infile_params: get_params11.tabular search_schemes|search_params_builder|param_set_0|sp_name: editednearestneighbours__n_neighbors search_schemes|search_params_builder|param_set_0|sp_list: [3,4,5] search_schemes|search_params_builder|param_set_1|sp_name: editednearestneighbours__random_state search_schemes|search_params_builder|param_set_1|sp_list: [10] search_schemes|search_params_builder|param_set_2|sp_name: randomforestclassifier__n_estimators search_schemes|search_params_builder|param_set_2|sp_list: [10, 50, 100, 500] search_schemes|search_params_builder|param_set_3|sp_name: randomforestclassifier__random_state search_schemes|search_params_builder|param_set_3|sp_list: [10] search_schemes|options|scoring|secondary_scoring: ['balanced_accuracy', 'accuracy'] search_schemes|options|scoring|primary_scoring: f1_macro search_schemes|options|cv_selector|n_splits: 5 search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: imblearn_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: imblearn_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline11 get_params11.tabular imblearn_X.tabular imblearn_y.tabular value |
| Test-19 |
search_schemes|infile_estimator: pipeline12 search_schemes|search_params_builder|infile_params: get_params12.tabular search_schemes|search_params_builder|param_set_0|sp_name: estimator__n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 100, 200] search_schemes|search_params_builder|param_set_1|sp_name: n_features_to_select search_schemes|search_params_builder|param_set_1|sp_list: [10, None] search_schemes|options|scoring|primary_scoring: r2 search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns |
name: value |
pipeline12 get_params12.tabular regression_X.tabular regression_y.tabular value |
| Test-20 |
search_schemes|infile_estimator: pipeline05 search_schemes|search_params_builder|infile_params: get_params05.tabular search_schemes|search_params_builder|param_set_0|sp_name: n_estimators search_schemes|search_params_builder|param_set_0|sp_list: [10, 50, 100, 300] search_schemes|selected_search_scheme: GridSearchCV input_options|infile1: regression_X.tabular input_options|header1: True input_options|column_selector_options_1|selected_column_selector_option: all_columns input_options|infile2: regression_y.tabular input_options|header2: True input_options|column_selector_options_2|selected_column_selector_option2: all_columns outer_split|cv_selector|n_splits: 3 outer_split|cv_selector|shuffle: True outer_split|cv_selector|random_state: 123 outer_split|cv_selector|selected_cv: KFold outer_split|split_mode: nested_cv |
name: value |
pipeline05 get_params05.tabular regression_X.tabular regression_y.tabular value |