Repository revision
2:3fc2116ac6d9

Repository 'maxquant_mqpar'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant_mqpar

MaxQuant (using mqpar.xml) tool metadata
Miscellaneous
maxquant_mqpar
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant_mqpar/maxquant_mqpar/1.6.3.4
1.6.3.4
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant_mqpar/maxquant_mqpar/1.6.10.43
toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant_mqpar/maxquant_mqpar/1.6.3.4 (this tool)
maxquant_mqpar
Requirements (dependencies defined in the <requirements> tag set)
name version type
maxquant 1.6.3.4 package
python 3.7 package
Functional tests
name inputs outputs required files
Test-1 infile|select: mzxml_files
infile|mzxml_files: ['BSA_min_22', 'BSA_min_21.mzXML']
identifier_parse_rule: >([^\s]*)
mqpar_in: two/mqpar.xml
description_parse_rule: >(.*)
fasta_files: bsa.fasta
output: ['evidence', 'msms', 'mzTab', 'allPeptides', 'msmsScans', 'mzRange', 'parameters', 'peptides', 'peptideSection', 'proteinGroups', 'summary', 'modificationSpecificPeptides']
attributes: name
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BSA_min_22
BSA_min_21.mzXML
bsa.fasta
two/mqpar.xml
name